Esercitazioni

Data Bases 2021/2022 – Master Degree in Bioinformatics and Computational Genomics – Prof. Daniele Braga

Basi di Dati 1 2021/2022 – Ingegneria Informatica – Prof. Stefano Ceri

Informatica A 2021/2022 – Ingegneria Matematica – Prof. Alessandro Campi

Informatica A 2017/2018 – Ingegneria Matematica – Prof. Alessandro Campi

Informatica A 2016/2017 – Ingegneria Matematica – Prof. Alessandro Campi

 

New master theses proposals on viral genomics

1. Detection of SARS-CoV-2 co-occurring mutations (over massive data)

2. Machine Learning methods for extracting SARS-CoV-2-related entities and feeding a knowledge graph

3. Early warning system for data-driven SARS-CoV-2 variants’ detection (big-data approach)

4. VariantHunter (small scale)

Master theses proposals on human genomics

• Integration of genomic data and metadata from cancer genomics, epigenomics, genome-wide association studies, gene expression data repositories
• Building data warehouses for fast genomic data summarization and visualization
• Using machine learning approaches to transform unstructured genomics/biomedical metadata into structured and queryable formats
• Explore semantic web technologies for genomic metadata annotation

Please feel free to contact me for further details!

Concluded theses projects

• Progettazione e realizzazione di una procedura di integrazione per dati genomici
• Ontology-driven metadata enrichment for genomic datasets
• Integration of DNA variation data into a GDM repository and API development for identification of genomic populations
• Automatic data integration for genomic metadata through sequence-to-sequence models
• Integration of genome-wide association studies into the GeCo repository
• Gene quantification datasets: transformation and integration
• Data visualization mehtods for SARS-CoV-2 mutation data